PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023869-PA
Common NameOsI_26965
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 265aa    MW: 29661.2 Da    PI: 7.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023869-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-053676145
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45
                      +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L 
  BGIOSGA023869-PA 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLG 76
                      68899**********************996....34455555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1132104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-832104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1533585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN  60
LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML  120
RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQQ  180
PVIIEQHYAA TPRELQLFPE SASSEDSEPS QEHGISDHVT RPQARYPTPT ATLPVNLFPV  240
FPGRQDQQCS SGTSGTNEED RIGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.345490.0callus| flower| leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645391.10.0PREDICTED: transcription factor bHLH47
RefseqXP_015645392.10.0PREDICTED: transcription factor bHLH47
RefseqXP_015645393.10.0PREDICTED: transcription factor bHLH47
TrEMBLB8B4W80.0B8B4W8_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA023869-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-33bHLH family protein